![]() Please also read the 2015 tutorial on BP&P v3.4. Species tree inference with BPP using genomic sequences and the multispecies coalescent. BP&P version 4, installation instructions.BP&P version 4, GitHub repository for source code.The source code, installation guidelines, and tutorial for the latest version of BP&P can be found in the links below: The same control file works for both versions. ![]() Also, the multispecies-coalescent-with-introgression (MSci) model is implemented in BP&P v4 only, and not in BP&P v3.4. We suggest that you get BP&P version 4 as it contains all the functionalities of version 3.4 but runs much faster and supports multiple threads. The analyses may include estimation of population size (theta’s) and species divergence times (tau’s), species tree estimation, species delimitation, and estimation of cross-species introgression intensity. The BP&P program implements a series of Bayesian inference methods under the multispecies coalescent model with and without introgression. A fairly extensive introduction to UNIX commands, written by Tim Massingham for the Workshop on Computational Molecular Evolution (CoME), is available here.īP&P: Bayesian analysis of genomic sequence data under the multispecies coalescent model.Tutorial to use the command line for Mac OS X/Linux/UNIX users.Tutorial to use the command line for Windows users.Here, you have some links to command line tutorials on different operating systems: The best way of running the programs listed below is by using the command line. Tutorials for Windows and Mac OS X/Linux/UNIX command line Phylogenetic Analysis by Maximum Likelihood (PAML).BP&P: Bayesian analysis of genomic sequence data under the multispecies coalescent model. ![]()
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